PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g093680.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 125aa    MW: 13332.5 Da    PI: 10.9602
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g093680.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000134567123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++Cp+Cg  F+    L  H+r+H
  Csa11g093680.1 45 HPCPICGVEFPMGQALGGHMRRH 67
                    78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139120.0471222IPR007087Zinc finger, C2H2
SuperFamilySSF576671.41E-54371No hitNo description
PROSITE profilePS501579.6814572IPR007087Zinc finger, C2H2
PfamPF139121.6E-114568IPR007087Zinc finger, C2H2
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MIHHAILFKR VALGGHRASH KKPNNNNNET LSSSGLVKKA KTTSHPCPIC GVEFPMGQAL  60
GGHMRRHRNE SGAAGALVTR ALLPEPTVTT LKKSSSGKRV ACLDLSLGMV ENLNLKLELG  120
RTVY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010443762.12e-77PREDICTED: zinc finger protein ZAT12
SwissprotQ424101e-67ZAT12_ARATH; Zinc finger protein ZAT12
TrEMBLR0GRX78e-69R0GRX7_9BRAS; Uncharacterized protein
STRINGscaffold_802618.18e-66(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20281876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.18e-69C2H2 family protein